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                                  NOISE in INTRACELLULAR TRANSPORT

Biologists observe things that cannot be explained.

Theorists explain things that cannot be observed.”

(Aharon Katchalsky)

  1. Metzler R., Jae-Hyung Jeon, Cherstvy A.G., Barkai E.: Anomalous diffusion models and their properties: non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking. Phys.Chem.Chem.Phys., Vol. 16, 2014, Article # 24128. DOI 10.1039/c4cp03465a

  2. Lukassen L.J., Oberlack M.: Colored-noise Fokker-Planck Equation for the Shear-Induced Self-Diffusion Process of Non-Brownian Particles. Physical Review E, Vol. 89, no. 5, 2014, Article # 052145. DOI 10.1103/PhysRevE.89.052145

  3. Pinaud O.: A note on stochastic Schrodinger equations with fractional multiplicative noise. J. of Differential Equations, Vol. 256, no. 4, 2014, pp. 1467 – 1491. DOI 10.1016/j.jde.2013.11.003

  4. Echeverria J., Monturet S., Joachim C.: One-way Rotation of a Molecule-rotor Driven by a Shot Noise. Nanoscale, Vol. 6, no. 5, 2014, pp. 2793 – 2799. DOI 10.1039/c3nr05814j

  5. Mauro A.J., Sigurdsson J.K., Shrake J., Atzberger P.J., Isaacson S.A.: A First-Passage Kinetic Monte Carlo method for reaction drift diffusion processes. Journal of Computational Physics, Vol. 259, 2014, pp. 536 – 567.

  6. Latorre J.C., Kramer P.R., Pavliotis G.A.: Numerical methods for computing effective transport properties of flashing Brownian motors. Journal of Computational Physics, Vol. 257, Part: A, 2014, pp. 57 – 82.  DOI 10.1016/j.jcp.2013.09.006 arXiv:1301.4301

  7. Fiasconaro A., Gudowska-Nowak E., Ebeling W.: Controlling Uphill motion of an Active Brownian Particle Driven by Shot-noise Energy Pulses. Physical Review E, Vol. 87, no. 3, 2013, Article # 032111. DOI 10.1103/PhysRevE.87.032111

  8. Makarov D.V., Konkov L.E.: Quantum ratchet driven by broadband perturbation. Physics Lett. A, Vol. 377, no. 43, 2013, pp. 3093 – 3097. DOI 10.1016/j.physleta.2013.09.035

  9. P. C. Bressloff, J. Newby: Stochastic models of intracellular transport. Rev. Mod. Phys. Vol. 85, no. 1, 2013, pp 135 – 196. DOI 10.1103/RevModPhys.85.135

  10. B. Qian, D. Montiel, A. Bregulla, F. Cichos, Haw Yang : Harnessing thermal fluctuations for purposeful activities: the manipulation of single micro-swimmers by adaptive photon nudging. Chemical Science, 2013, 10 pages. DOI 10.1039/c2sc21263c

  11. J.C. Latorre, G.A. Pavliotis, P.R. Kramer: Corrections to Einstein’s relation for Brownian motion in a tilted periodic potential. Journal of Statistical Physics, Vol. 150, 2013, pp. 776 – 803. arXiv:1208.2150v1

  12. Jeon Jae-Hyung, Barkai E., Metzler R.: Noisy continuous time random walks. Journal of Chemical Physics, Vol. 139, no. 12, 2013, Article # UNSP 121916. DOI 10.1063/1.4816635

  13. Gowrishankar T.R., Smith K.C., Weaver J.C.: Transport-Based Biophysical System Models of Cells for Quantitatively Describing Responses to Electric Fields. Proc. of the IEEE, Vol. 101, no. 2, 2013, pp. 505 – 517. DOI 10.1109/JPROC.2012.2200289

  14. Reid M.T.H., Rodriguez A.W., Johnson S.G.: Fluctuation-Induced Phenomena in Nanoscale Systems: Harnessing the Power of Noise. Proc. of the IEEE, Vol. 101, no. 2, 2013, pp. 531 – 545. DOI 10.1109/JPROC.2012.2191749

  15. Bakewell D.J., Chichenkov A.: Fourier-Bessel Series Modeling of Dielectrophoretic Bionanoparticle Transport: Principles and Applications. IEEE Trans on NanoBioscience, Vol.11, no.1, 2012, pp 79 – 86. DOI 10.1109/TNB.2011.2178430

  16. Barkai E., Garini Y., Metzler R.: Strange Kinetics of Single Molecules in the Cell. Physics Today, Vol. 65, no. 8, 2012, pp. 29 – 37. DOI 10.1063/PT.3.1677

  17. Marquez-Lago T.T., Leier A., Burrage K.: Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in systems biology. IET Systems Biology, Vol. 6, no. 4, 2012, pp. 134 – 142. DOI 10.1049/iet-syb.2011.0049

  18. Khataee H.R., Ibrahim M.Y.: Modelling of internal architecture of kinesin nanomotor as a machine language. IET Nanobiotechnology, Vol. 6, no. 3, 2012, pp. 87 – 92. DOI 10.1049/iet-nbt.2011.0062

  19. Yoshihiko Hasegawa, Masanori Arita : Fluctuating noise drives Brownian transport. Journal of the Royal Society Interface, Vol. 9, no. 77, 2012, pp. 3554 – 3563. DOI 10.1098/rsif.2012.0603

  20. M. L. Dekhtyar, V. М. Rozenbaum : Symmetry interplay in Brownian photomotors: From a single-molecule device to ensemble transport. Journal of Chemical Physics, Vol. 137, no. 12, 2012, pp 4298 – 4302. DOI 10.1063/1.4754274

  21. S. L. Wynia-Smith, M.J. Brown, G. Chirichella, G. Kemalyan, B. A. Krantz : Electrostatic Ratchet in the Protective Antigen Channel Promotes Anthrax Toxin Translocation. The Journal of Biological Chemistry, Vol. 287, no. 52, 2012, pp. 43753 – 43764. DOI 10.1074/jbc.M112.419598

  22. D. Rings, D. Chakraborty, K. Kroy : Rotational hot Brownian motion. New Journal of Physics, Vol. 14, 2012, 053012 (15pp). DOI 10.1088/1367-2630/14/5/053012

  23. A. Lohrasebi, S. Mohamadi, S. Fadaie, H. Rafii-Tabar : Modelling the influence of thermal effects induced by radio frequency electric field on the dynamics of the ATPase nano-biomolecular motors. Physica Medica, 2012, Vol. 28, no. 3, pp. 221 – 229. DOI 10.1016/j.ejmp.2011.07.004

  24. P. C. Bressloff, J. Newby: Filling of a Poisson trap by a population of random intermittent searchers. Phys. Rev. E, Vol. 85, no. 3, 2012, pp 031909-1 – 031909-10. DOI 10.1103/PhysRevE.85.031909

  25. Wan Rong Zheng, Hu Jun, Fang Hai Ping : Asymmetric transportation induced by thermal noise at the nanoscale. Science China Physics, Mechanics & Astronomy, Vol. 55, no. 5, 2012, pp. 751 – 756. DOI 10.1007/s11433-012-4695-8

  26. Virgil Muresan, Zoia Muresan : Unconventional functions of microtubule motors. Archives of Biochemistry and Biophysics, Vol. 520, 2012, pp. 17 – 29. DOI 10.1016/j.abb.2011.12.029

  27. A. Khangjune Lee, Jong-Rim Lee, K.H. Lee : Asymmetric step-like characteristics in a tilted rocking ratchet potential. Physica B, Vol. 407, 2012, pp. 4298 – 4302. DOI 10.1016/j.physb.2012.07.021

  28. A. Pototsky, F. Marchesoni, F.V. Kusmartsev, P. Hänggi, S.E. Saveliev : Relativistic Brownian motion on a graphene chip. The European Physical Journal B, Vol. 85, no. 10, 2012, pp 356 (8 pp) DOI 10.1140/epjb/e2012-30716-7

  29. Rowchowdhury S., Salapaka S., Salapaka M.: Maximizing transport in open loop for flashing ratchets. American Control Conference (ACC), 2012, pp. 3210 – 3215. URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6315543&isnumber=6314593

  30. Minhua Qiu, Hao-Chih Lee, Ge Yang: Nanometer resolution tracking and modeling of bidirectional axonal cargo transport. IEEE Int. Symp. on Biomedical Imaging (ISBI), 2012, pp. 992 – 995. DOI 10.1109/ISBI.2012.6235724

  31. Enomoto A., Moore M.J., Nakano T., Suda T.: Stochastic cargo transport by molecular motors in molecular communication. IEEE Int. Conf. on Communications (ICC), 2012, pp. 6142 – 6145. DOI 10.1109/ICC.2012.6364950

  32. C. Leduc, K. Padberg-Gehle, V. Varga, D. Helbing, S. Diez, J. Howard : Molecular crowding creates traffic jams of kinesin motors on microtubules. PNAS, Vol. 109, no. 16, 2012, pp. 6100 – 6105. DOI 10.1073/pnas.1107281109

  33. Pradipta Ghosh, S. Chattopadhyay, J. R. Chaudhuri : Enhancement of current commensurate with mutual noise–noise correlation in a symmetric periodic substrate: The benefits of noise and nonlinearity. Chemical Physics, Vol. 402, 2012, pp 48 – 55. DOI 10.1016/j.chemphys.2012.04.007

  34. Vasilescu G., Chen L.: SPICE Simulation of Intracellular Transport: Free Diffusion. Asian Journal of Control, Vol. 13, no. 5, Sept. 2011, pp. 1 – 11. DOI 10.1002/asjc.384 (wileyonlinelibrary.com)

  35. P. C. Bressloff, Jay Newby: Quasi-steady state analysis of motor-driven transport on a two-dimensional microtubular network. Phys. Rev. E, Vol. 83, no. 6, 2011, pp 061139-1 – 061139-14. DOI 10.1103/PhysRevE.83.061139

  36. Chakraborty D., Gnann  M. V., Rings D., Glaser J., Otto F., Cichos F., Kroy K.: Generalised Einstein relation for hot Brownian motion.  EPL (Europhysics Letters), Vol. 96, 2011, p. 60009 DOI 10.1209/0295-5075/96/60009

  37. R. P. Erickson, Zhiyuan Jia, S. P. Gross, C. C. Yu : How Molecular Motors Are Arranged on a Cargo Is Important for Vesicular Transport. PLOS Computational Biology, Vol. 7, no. 5, 2011, pp. 1002011 – 1002032. DOI 10.1371/journal.pcbi.1002032

  38. Mizuno D., Head D., MacKintosh F. C., Schmidt C. F. :Motor-driven force fluctuations in suspended cells and in cytoskeletal model systems. Molecular Biology of the Cell, 2011, Vol. 22, pp. 1955.

  39. T. L. Fallesen, J. C. Macosko, G. Holzwarth : Force–velocity relationship for multiple kinesin motors pulling a magnetic bead. Eur Biophys J, Vol. 40, no. 9, 2011, pp. 1071 – 1079. DOI 10.1007/s00249-011-0724-1

  40. D. Clausznitzer, R. G Endres : Noise characteristics of the Escherichia coli rotary motor. BMC Systems Biology, Vol. 5, 151, 2011, 23 pp. DOI10.1186/1752-0509-5-151

  41. J. Howard : Motor Proteins as Nanomachines: The Roles of Thermal Fluctuations in Generating Force and Motion. Progress in Mathematical Physics, Vol. 60, 2011, pp 47 – 59. DOI 10.1007/978-3-0346-0428-4_3

  42. V. M. Rozenbaum, Y. A. Makhnovskii, S.-Y. Sheu, D.-Y. Yang, S. H. Lin : Two-state Brownian motor driven by synchronously fluctuating unbiased forces. Phys. Rev. E, Vol. 84, no. 2, 2011, pp 021104 (8 pages). DOI 10.1103/PhysRevE.84.021104

  43. Butterfield A. E., Skliar M.: Temporally resolved molecular motor dynamics: A case of ncd-microtubule interactions. Int. IEEE/EMBS Conf. on Neural Engineering (NER), 2011, pp. 708 – 711. DOI 10.1109/NER.2011.5910646

  44. L. W. Rossi, C. Goldman : Jamming of molecular motors as a tool for transport cargos along microtubules. 2011, arXiv:1107.1507v3

  45. G. Verley, K. Mallick, D. Lacoste: Modified fluctuation-dissipation theorem for non-equilibrium steady states and applications to molecular motors. EPL (Europhysics Letters), Vol. 93, no 1, 2011, pp 10002-1 – 10002-6. DOI 10.1209/0295-5075/93/10002

  46. Cheng-Hung Chang, Tian-Yow Tsong: Unidirectional rotation driven by random fluctuations. 21st Int. Conf. on Noise and Fluctuations (ICNF), 12-16 June 2011, pp 41 – 44. DOI 10.1109/ICNF.2011.5994359

  47. M Esposito, M Galperin: Self-consistent quantum master equation approach to molecular transport. Journal of Physical Chemistry B, Vol. 114, no 48, 2010, pp 20362 – 20369. ISSN: 19327447

  48. Rings D., Schachoff R., Selmke M., Cichos F., Kroy K.:  Hot Brownian Motion. Physical Review Letters, Vol. 105, 2010, p. 090604  DOI 10.1103/PhysRevLett.105.090604

  49. Zhigang Zheng, Hongbin Chen: Cooperative two-dimensional directed transport. EPL (Europhysics Letters), Vol. 92, no 3, 2010, pp 30004-1 – 30004-6. DOI 10.1209/0295-5075/92/30004

  50. R. Perez-Carrasco, J. M. Sancho: Fokker-Planck approach to molecular motors. EPL (Europhysics Letters), Vol. 91, no 6, 2010, pp 60001-1 – 30004-6. DOI 10.1209/0295-5075/91/60001

  51. C. Pallavicini, M. A. Despósito, V. Levi, L. Bruno: Analysis of persistence during intracellular actin-based transport mediated by molecular motors. J. Phys.: Conf. Ser. Vol. 246, 2010, pp 012038 DOI 10.1088/1742-6596/246/1/012038

  52. Schiffmann C., Cécile Appert-Rolland, L. Santen: Shock dynamics of two-lane driven lattice gases. J. Stat. Mech., no 6, 2010, pp 06002, 24 pages. DOI 10.1088/1742-5468/2010/06/P06002

  53. J. Newby, P. C. Bressloff: Random intermittent search and the tug-of-war model of motor-driven transport. J. Stat. Mech., no 4, 2010, pp 04014, 24 pages. DOI 10.1088/1742-5468/2010/04/P04014

  54. Bao-quan Ai, Ya-feng He:Competition between ac driving forces and Lévy flights in a nonthermal ratchet. J. Stat. Mech., 2010, P04010 doi:10.1088/1742-5468/2010/04/P04010

  55. Ambarish Kunwar, A. Mogilner: Robust transport by multiple motors with nonlinear force–velocity relations and stochastic load sharing. Phys. Biol., Vol. 7, 2010, pp 016012, 14 pages. DOI 10.1088/1478-3975/7/1/016012

  56. Li Fang-Zhen, Jiang Li-Chun: A simplified tether model for molecular motor transporting cargo. Chinese Phys. B, Vol. 19, 2010, pp 020503 DOI 10.1088/1674-1056/19/2/020503

  57. Little M. A., Jones N. S.: Sparse Bayesian step-filtering for high-throughput analysis of molecular machine dynamics. IEEE Int. Conf on Acoustics, Speech, and Signal Processing (ICASSP), 2010, pp. 4162 – 4165. DOI 10.1109/ICASSP.2010.5495722

  58. Warrier A.G., Barani D.M., Deepak O.M., Krishnan N.P.K., Sujan S.S., Sairam G.L.: Biomolecular motor proteins as targets for cancer treatment- a computational study. IEEE Students' Technology Symposium (TechSym), 2010, pp. 17 – 20. DOI 10.1109/TECHSYM.2010.5469186

  59. Moore M.-J., Suda T., Oiwa K.: Molecular Communication: Modeling Noise Effects on Information Rate. IEEE Trans on NanoBioscience, Vol. 8, no. 2, 2009, pp. 169 – 180. DOI 10.1109/TNB.2009.2025039

  60. Kam N, Pilpel Y, Fainzilber M.: Can molecular motors drive distance measurements in injured neurons? PLoS Comput Biol., Vol. 5, no. 8, 2009, e1000477, 14 pages. DOI 10.1371/journal.pcbi.1000477. PMID: 19696880

  61. Moore M.J., Enomoto A., Watanabe S., Oiwa K., Suda T.: Simulating molecular motor uni-cast information rate for molecular communication. Annual Conf. on Information Sciences and Systems (CISS), 2009, pp. 859 – 864. DOI 10.1109/CISS.2009.5054837

  62. Shwetha M., Suchitra M., Vasavi C.S., Radhagayathri K.U., Krishnan N.P.K., Gopakumar D.: Computational Modeling and Simulation of Biomolecular Motors. Int. Conf. on Advances in Computing, Control, & Telecom. Technologies, (ACT), 2009, pp. 130 – 134. DOI 10.1109/ACT.2009.41

  63. Perkins T. T.: Dynamics of DNA-based molecular motors measured with 1-bp resolution. Conf. on Lasers and Electro-Optics Europe & European Quantum Electronics Conf. (CLEO Europe - EQEC 2009), 2009, pp. 1 DOI 10.1109/CLEOE-EQEC.2009.5191666

  64. Yunxin Zhang: The Efficiency of Molecular Motors. Journal of Statistical Physics, Vol. 134, Number 4, 2009, pp 669 – 679. DOI 10.1007/s10955-009-9695-3

  65. Tucker R., Saha A.K., Katira P., Bachand M., Bachand G.D., Hess H.: Temperature compensation for hybrid devices: Kinesin's Km is temperature independent. Small, Vol. 5, 2009. DOI 10.1002/smll.200801510

  66. M. Feito, F. J. Cao: Optimal operation of feedback flashing ratchets. J. Stat. Mech., 2009, P01031. DOI 10.1088/1742-5468/2009/01/P01031

  67. A. Fiasconaro, E. Gudowska-Nowak, W. Ebeling: Tuning active Brownian motion with shot-noise energy pulses. J. Stat. Mech., 2009, P01029. DOI 10.1088/1742-5468/2009/01/P01029 

  68. P. Kotelenez, M. J. Leitman, J. A. Mann: Correlated Brownian motions and the depletion effect in colloids. J. Stat. Mech., 2009, P01054. DOI 10.1088/1742-5468/2009/01/P01054

  69. E. M. Craig, B. R. Long, J. M. R. Parrondo, H. Linke: Effect of time delay on feedback control of a flashing ratchet. EPL (Europhysics Letters), Vol. 81, 2008, pp 10002-p1 – 10002-p6. DOI 10.1209/0295-5075/81/10002

  70. Chowdhury D.: Molecular Motors: Design, Mechanism, and Control. Computing in Science & Engineering , Vol. 10, no 2,, 2008, pp 70 – 77. DOI 10.1109/MCSE.2008.58

  71. Wang H.: Several Issues in Modeling Molecular Motors. J. of Computational and Theoretical Nanoscience, Vol. 5, 2008, pp 1 – 35. DOI 10.1166/jctn.2008.1202

  72. T. Schmiedl, U. Seifert: Efficiency of molecular motors at maximum power. EPL (Europhysics Letters), Vol. 83, No. 3, 2008. DOI 10.1209/0295-5075/83/30005

  73. E. M. Craig: Models for Brownian and Biomolecular Motors. Ph.D. University of Oregon, 2008, 172 pages.

  74. Wang Hongyun, Zhou Hong : Stokes Efficiency of Molecular Motor-Cargo Systems. Abstract and Applied Analysis, Vol. 2008, 2008, Article ID 241736, 13 pages. DOI 10.1155/2008/241736

  75. Kinderlehrer D. : Aspects of Modeling Transport in Small Systems with a Look at Motor Proteins. Mathematical Modeling, Simulation, Visualization and e-Learning, 2008, pp 153 – 163. DOI 10.1007/978-3-540-74339-2_9

  76. Hastings S., Kinderlehrer D., Mcleod J. B. : Diffusion Mediated Transport with a Look at Motor Proteins., 2008. Carnegie Mellon University, Pittsburgh, PA 15213.

  77. Harada Takahiro, Shin-ichi Sasa: Fluctuations, Responses and Energetics of Molecular Motors. Mathematical Biosciences, Vol. 207, no. 2, June 2007, pp. 365 – 386. DOI 10.1016/j.mbs.2006.11.003

  78. Hiyama S., Moritani Y., Suda T., Shima T., Sutoh K.: An autonomous molecular transport system using DNAs and motor proteins in molecular communication. Bio-Inspired Models of Network, Information and Computing Systems (BIMNICS), 2007, pp. 135 – 138. DOI 10.1109/BIMNICS.2007.4610099

  79. Hiratsuka Y., Takeuchi S.: Towards a microrotary motor driven by motor proteins. IEEE Int. Conf. on Micro Electro Mechanical Systems (MEMS), 2007, pp. 695 – 698. DOI 10.1109/MEMSYS.2007.4433170

  80. Yanagida T.: Single molecule nanobiology for elucidating the mechanism involved in utilizing fluctuations by biosystems. IEEE Int. Symp. on the Applications of Ferroelectrics (ISAF), 2007, pp. 855 DOI 10.1109/ISAF.2007.4393426

  81. Wei H.-H.: Dynamic Surfing and Trapping of Charged Colloids in a Traveling-Wave Electrophoretic Ratchet. Applied Physics Letters, Vol. 90, no 20, 2007, pp 204103.1 – 204103.3. DOI 10.1063/1.2740176

  82. H. Wang, T. C. Elston: Mathematical and Computational Methods for Studying Energy Transduction in Protein Motors. J. of Statistical Physics, Vol. 128, no. 1 & 2, July 2007, pp 35 – 76. DOI 10.1007/s10955-006-9169-9

  83. S. B. Rivera, S. J. Koch, J. M. Bauer, J. M. Edwards, G. D. Bachand: Temperature dependent properties of a kinesin-3 motor protein from Thermomyces lanuginosus. Fungal Genetics and Biology, Vol. 44, no 11, 2007, pp 1170 – 1179. doi:10.1016/j.fgb.2007.02.004

  84. G. D. Bachand, C. D. Montemagno: Constructing Organic/Inorganic NEMS Devices Powered by Biomolecular Motors. Biomedical Microdevices, Vol. 2, No 3, pp 179 – 184. DOI 10.1023/A:1009924327649

  85. D. V. Nicolau: Dynamic Nanodevices Based on Protein Molecular Motors. Chapter 12 in the book: BioMEMS and Biomedical Nanotechnology, Vol. 1, 2006, pp 327 – 361. ISBN-13 978-0387-25567-7

  86. H. Bolterauer, J. A. Tuszynski, E. Unger: A Directed Binding Mechanism of Processive Motion for the Kinesin Motor Protein Families. Acta Physica Polonica B, Vol. 37, no. 5, 2006, pp 1425 – 1443. Bibliographic Code 2006AcPPB..37.1425B   

  87. A. Sauga: The influence of environmental fluctuations on the dynamics of non-linear systems. Tallinn University, Dissertation on Natural Sciences, 2006, pp 1 – 30.

  88. M. Bier: The stepping motor protein as a feedback control ratchet. BioSystems, 2006, pp 1 – 7. doi:10.1016/j.biosystems.2006.07.013

  89. S. M. Block: Kinesin Motor Mechanics: Binding, Stepping, Tracking, Gating, Limping…and some Newly Discovered Rotational States. Speaker Paper 3, pp SP3-A – SP3-N. www.biophysics.org/discussions/2006/Block.pdf

  90. J. Fricks, H. Wang, T. C. Elston: A numerical algorithm for investigating the role of motor-cargo linkage in molecular motor-driven transport. Journal of Theoretical Biology, Vol. 239, 2006, pp 33 – 48. DOI 10.1016/j.jtbi.2005.07.010

  91. Tung S., Kim J.W.: Microscale hybrid devices powered by biological flagellar motors. IEEE Trans on Automation Science and Engineering, Vol. 3, no. 3, 2006, pp. 260 – 263. DOI 10.1109/TASE.2006.876905

  92. Han Ying-Rong, Zhan-Yong, Zhao Tong-jun, An Hai-Long, Zhang Su-Hua, Liu Hui, Zhang Yu-hong, Zheng-Yan, Zhuo Yi-Zhong: The Use of an `Effective Potential' to Describe the Directed Motion of a Two-State Molecular Motor. IEEE Annual Int. Conf. of Engineering in Medicine and Biology Society (EMBS), 2006, pp. 640 – 643. DOI 10.1109/IEMBS.2006.260432

  93. Moore M., Enomoto A., Nakano T., Suda T., Kayasuga A., Kojima H., Sakakibara H., Oiwa K.: Simulation of a Molecular Motor Based Communication Network. Bio-Inspired Models of Network, Information and Computing Systems (BIMNICS), 2006, pp. 1 DOI 10.1109/BIMNICS.2006.361824

  94. Mansson A., Sundberg M., Bunk R., Balaz M., Nicholls I.A., Omling P., Tegenfeldt J.O., Tagerud S., Montelius L.: Actin-Based Molecular Motors for Cargo Transportation in Nanotechnology - Potentials and Challenges. IEEE Trans. on Advanced Packaging, Vol. 28, no. 4, 2005, pp. 547 – 555. DOI 10.1109/TADVP.2005.858309

  95. Vogel V.: Nanoshuttles driven by biological motors. IEEE/EMBS Special Topic Conf. on Microtechnology in Medicine and Biology (MMB), pp. 1, 2005 DOI 10.1109/MMB.2005.1548364

  96. Thomas N.: Molecular motors: Thermodynamics and ATP synthesis. IEEE Int. Conf. on Robotics and Biomimetics (ROBIO), 2005, pp. 360 – 364. DOI 10.1109/ROBIO.2005.246293

  97. P. Hänggi, F. Marchesoni: Introduction: 100 years of Brownian motion. Chaos, Vol. 15, no 2, 2005, pp 026101 – 026101-5. DOI 10.1063/1.1895505

  98. S. J. Winder, K. R. Ayscough: Actin-binding proteins. Journal of Cell Science, Vol. 118, no. 4, 2005, pp 651 – 654. DOI 10.1242/jcs.01670

  99. P. J. Atzberger, C. S. Peskin: A Brownian dynamics model of kinesin in three dimensions incorporating the force-extension profile of the coiled-coil cargo tether. Bulletin of Mathematical Biology, 14 July 2005, pp 1 – 42. DOI 10.1007/s11538-005-9003-6 

  100. F. Cecconi, M. Cencini, M. Falcioni, A. Vulpiani: Brownian motion and diffusion: From stochastic processes to chaos and beyond. Chaos, Vol. 15, 026102, 2005, pp 1 – 9. DOI 10.1063/1.1832773

  101. H. Wang: Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms. Inst. of Physics Publishing, J. of Physics: Condensed Matter, Vol. 17, no 47, 2005, pp S3997 – S4014. DOI 10.1088/0953-8984/17/47/024

  102. J. Ankerhold, H. Grabert, P. Pechukas: Quantum Brownian motion with large friction. Chaos, Vol. 15, no 2, 2005, pp 026106 – 026106-11. DOI 10.1063/1.1855731

  103. B. Ai, , L. Wang, L. Liu: Transport reversal in a thermal ratchet. Phys. Rev. E, Vol. 72, issue 3, 2005, pp 031101 – 5. DOI 10.1103/PhysRevE.72.031101

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  105. R. A. Cross: Intracellular Transport. Encyclopedia of Life Sciences, 2005, J. Wiley & Sons, www.els.net, A0003953, pp 1 – 12.

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  108. A. Mogilner, T. Elston, H. Wang, G. Oster: Molecular Motors: Theory. In Joel Keizer's Computational Cell Biology, edited by C. Fall, E. Marland, J. Tyson, and J. Wagner. (Springer, New York), Chapter 12, 2005, pp 321 – 355. ISBN-10: 0387953698

  109. Y-Z. Du, Y. Hiratsuka, S. Taira, M. Eguchi, T. Q. P. Uyeda, N. Yumoto, M. Kodaka: Motor protein nano-biomachine powered by self supplying ATP. ChemComm, Feb. 2005, DOI 10.1039/b500327 

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Links:

J. M.R. Parrondo, B. J. de Cisneros, R. Brito: Thermodynamics of Isothermal Brownian Motors. http://seneca.fis.ucm.es/parr/PAPERS_PS/Parrondo-lutz.pdf

R. Tsekov: Nonlinear quantum Brownian motion. http://www.fqxi.org/data/forum-attachments/arXiv_0711.1442.pdf

R. E. Lee DeVille, E. Vanden-Eijnden: Regular gaits and optimal velocities for motor proteins.

M. L. Kutys, J. Fricks, W. O. Hancock: Monte Carlo Analysis of Neck Linker Extension in Kinesin Molecular Motors. 34 pages.

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